PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063583001
Common NameGSBRNA2T00063583001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 293aa    MW: 33179.6 Da    PI: 4.4583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063583001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-061912301155
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           R +++ +++  L++l+ +      +K + a++L  A+eYIk Lq
  GSBRNA2T00063583001 191 VRKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 230
                          577888999********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.725180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-4186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11189237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-6190233No hitNo description
Gene3DG3DSA:4.10.280.101.8E-9194234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTEEFETVGV RTGSWWSFPS GMFSDLSQPR STEISIDIGG FEWQNIDNID AETYDKSHTS  60
TLSSNRNLDS TSQVNAWNQY NHREEERFDP ISSFLEGLFD NSELSVPSVK PELLESFHFF  120
DDVFLNESRT VSVFDHEIGE KHDEEIQAWK SLITCERASE KTEDLEDIES LPPLKRPRLE  180
TPTQFPSFKK VRKEKLGDRI TALQQLVSPF GKTDTASVLH DAIEYIKFLQ EQITVSSNPQ  240
LNSKGSGEQK QWSYNGTHAE DSSLGQDLRS RGLCLIPISS TFSTSPLHFG LI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mature root endodermis. {ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063583001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1045301e-129EF104530.1 Brassica rapa clone E30_5 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653898.10.0transcription factor bHLH103-like
RefseqXP_013669203.10.0transcription factor bHLH103-like
SwissprotQ8VZ221e-132BH103_ARATH; Transcription factor bHLH103
TrEMBLA0A078JLY90.0A0A078JLY9_BRANA; BnaAnng24280D protein
TrEMBLA0A3P5Z7E40.0A0A3P5Z7E4_BRACM; Uncharacterized protein
STRINGBra013520.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147121418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-134bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]