PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063939001
Common NameGSBRNA2T00063939001, LOC106351418, LOC106444239
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 290aa    MW: 32849.5 Da    PI: 7.3927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063939001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-061742101455
                          HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ +++  L +++P+      kK+s +++Le++ +YI  Lq
  GSBRNA2T00063939001 174 RKVSDRIRSLEKIMPWE-----KKMSLSTTLEETHKYITFLQ 210
                          6899************9.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.537160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-6175217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-4175216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MESCYEFESL SELPPLPQAY APMEYHPYDI TPLESLPPFP HSDFAPHGGL IPFSDTHQDY  60
LQLQKQQHCV ESMFTDSSLP LVTRDYLTES TRFENLFSHD VPFLHLPDLK FVEGARSPPP  120
CLSLAPPPPL PVARHNVNLR QRHVGSRVNK TFSISPSSSS KSKPPASQYV HGTRKVSDRI  180
RSLEKIMPWE KKMSLSTTLE ETHKYITFLQ SQIASLRWMP LDSVYPTKPR EEHVGETTSL  240
LNSLTRQQLL QVIANSPGSR NVLYKQGVCV FSYEQLLSVK MMAESARNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063939001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646677.10.0transcription factor bHLH117-like
RefseqXP_013741191.10.0transcription factor bHLH117
SwissprotQ9LRJ41e-65BH117_ARATH; Transcription factor bHLH117
TrEMBLA0A078HGA30.0A0A078HGA3_BRANA; BnaC05g30500D protein
TrEMBLA0A3P6FIC90.0A0A3P6FIC9_BRAOL; Uncharacterized protein
STRINGBo5g098430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]