PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064089001
Common NameGSBRNA2T00064089001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 185aa    MW: 21039.9 Da    PI: 9.7482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064089001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-067092123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  GSBRNA2T00064089001 70 FVCEICNKGFQRDQNLQLHRRGH 92
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.82E-76992No hitNo description
PROSITE profilePS5015710.9497092IPR007087Zinc finger, C2H2
SMARTSM003550.0177092IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355240112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.82E-7142167No hitNo description
SMARTSM00355180147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNEDILLHQQ VQQQEENMSN LTSASGDQAS VSSGNRTEPQ KKRRNQPGNP DPESEVIALS  60
PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVIRKK VYVCPEASCV  120
HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DCKAHSKTCG TKEYRCDCGT  180
LFSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-20143184344Zinc finger protein JACKDAW
5b3h_F3e-20143184344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064089001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646412.11e-129protein indeterminate-domain 11-like isoform X2
RefseqXP_022550964.11e-129protein indeterminate-domain 11-like isoform X1
RefseqXP_022550965.11e-129protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW71e-116IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A078HJH61e-136A0A078HJH6_BRANA; BnaC01g37430D protein
STRINGBo1g134920.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-107indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]