PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00064246001

Common Name

GSBRNA2T00064246001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 249aa MW: 28045.4 Da PI: 4.6061

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00064246001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	41	3.8e-13	102	151	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W KYGqK++k s + r +C+++k+v++ ++ p+v +tY g+H +e GSBRNA2T00064246001 102 NDGFSWMKYGQKKIKTSSHQR--------NCNATKRVQQIQDSPSVYRTTYVGKHMCE 151 8**************9977........7***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-14	96	152	IPR003657	WRKY domain
PROSITE profile	PS50811	10.671	96	153	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-15	98	152	IPR003657	WRKY domain
SMART	SM00774	1.1E-17	101	152	IPR003657	WRKY domain
Pfam	PF03106	1.5E-12	102	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MFHGADRAVE ALLRGQESAN LLKTVLEHQR TSSVSIEPLF DTVLDSFSYA LSLFASSNPQ 60 PLCESSQNKP TPVVARKSPK KNSHGEEGLE QYNHDSPTPI CNDGFSWMKY GQKKIKTSSH 120 QRNCNATKRV QQIQDSPSVY RTTYVGKHMC EVNAFLQPNE DIVNGSKMIR FDKTDQGMPD 180 PVMPQLVPVE QEALIIEGTD QIMNLECGSN EFLVDDDQLW EYQFPPCSPG DFMFLDDLSE 240 FDYNPFHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00064246001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430072	1e-167	KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128407.1	0.0	PREDICTED: probable WRKY transcription factor 67
Swissprot	Q93WV7	3e-73	WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBL	A0A078HIW7	0.0	A0A078HIW7_BRANA; BnaA02g19590D protein
STRING	Bra008456.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5609	18	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66550.2	3e-70	WRKY DNA-binding protein 67

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]