PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00064294001

Common Name

GSBRNA2T00064294001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 229aa MW: 25172.5 Da PI: 8.991

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00064294001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.5	8.6e-17	26	77	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +s++ + a+i+ A++Y+k+Lq GSBRNA2T00064294001 26 QRMTHIAVERNRRKQMNEYLAVLRSLMPPC---YSQRGDQASIVGGAINYLKELQ 77 79**************************...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.0E-16	24	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.15E-15	24	81	No hit	No description
PROSITE profile	PS50888	16.761	25	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-19	25	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-14	26	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-14	31	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAATGGERRK RRRTRSNKNK EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPCYSQRG 60 DQASIVGGAI NYLKELQHQL QSMEPPVKIT ATEDTGATAA SAGDQNNTIS ASSSGPFSDF 120 FAFPQYSSRP SSSSVAEGTA EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH 180 LNVTTHDDSV LYSISLKVEE GSQLNTVEDI AAAVNQILMR IEEESPLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	12	RKRRR
2	8	13	RKRRRT
3	26	37	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00064294001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588246.1	1e-164	PREDICTED: transcription factor bHLH96-like
Refseq	XP_013672411.1	1e-164	transcription factor bHLH96-like
Refseq	XP_013684773.1	1e-164	transcription factor bHLH96-like
Swissprot	Q9C7T4	1e-127	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A078HK24	1e-167	A0A078HK24_BRANA; BnaCnng08490D protein
STRING	Bo6g114730.1	1e-164	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-121	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]