PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00064592001

Common Name

GSBRNA2T00064592001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 170aa MW: 19264 Da PI: 10.5198

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00064592001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.1	5.9e-20	23	72	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp + + +r++lg+f taeeAa a+++a+ +++g+ GSBRNA2T00064592001 23 YRGVRQRP-WGKYAAEIRDP---N-KaARVWLGTFNTAEEAALAYDKAAFEFRGH 72 9*****.******9...3.35***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.5E-14	22	72	IPR001471	AP2/ERF domain
CDD	cd00018	1.71E-33	22	81	No hit	No description
SMART	SM00380	9.5E-37	22	85	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-22	22	80	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.1E-33	22	80	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.723	22	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-11	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-11	45	61	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MTLIKWIIHI LKIKQRKSRQ RNYRGVRQRP WGKYAAEIRD PNKAARVWLG TFNTAEEAAL 60 AYDKAAFEFR GHKAKLNFPE HILINSSTHR YPSTATSHDP IIVTPVPPVA PDILLDQYGK 120 YLSENSYSST AILSMTISAS SSSLSQQENI PKLEDSESVK NMSIHKRRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-27	18	87	1	69	ATERF1
3gcc_A	4e-27	18	87	1	69	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00064592001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	0.0	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141338.1	1e-111	PREDICTED: ethylene-responsive transcription factor ERF112-like
Refseq	XP_013747263.1	1e-111	ethylene-responsive transcription factor ERF112-like
Swissprot	P93007	2e-59	EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBL	A0A078HLG8	1e-122	A0A078HLG8_BRANA; BnaA04g19700D protein
STRING	Bra021871.1-P	1e-111	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	4e-47	ERF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]