PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064615001
Common NameGSBRNA2T00064615001, LOC106447187
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 257aa    MW: 29262.1 Da    PI: 8.0289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064615001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12e-50141351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+++di+k++PwdLp      e+e yfFs+r+ ky++g+r+nr+t sgyWkatg dk
  GSBRNA2T00064615001  14 LPPGFRFHPTDEELVVQYLCRKVTGLPLPA-SVIPDIDICKADPWDLPGD---CESERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDK 99 
                          79****************************.99***************44...46799******************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++    ++lvg+kktLvfykg+ p+g++t+Wv+heyrl
  GSBRNA2T00064615001 100 QIGG--NKLVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 135
                          **87..889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5910157IPR003441NAC domain
PROSITE profilePS5100557.3714157IPR003441NAC domain
PfamPF023653.0E-2615135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEKLSSIKNR GLRLPPGFRF HPTDEELVVQ YLCRKVTGLP LPASVIPDID ICKADPWDLP  60
GDCESERYFF STREAKYPNG NRSNRSTGSG YWKATGIDKQ IGGNKLVGMK KTLVFYKGKP  120
PNGTRTNWVL HEYRLLDSQQ ESYGENTNWV LCRVFLKKTS NTSNKRKEDE KEINEEKEND  180
EDDNKSACPI FYDFLRKDKK RKRCCDLNVT PTCCCCCSAS ASSSVCSSAL TQTSTHNDSD  240
YHEEITCREI KFCLFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-551216015168NO APICAL MERISTEM PROTEIN
1ut4_B3e-551216015168NO APICAL MERISTEM PROTEIN
1ut7_A3e-551216015168NO APICAL MERISTEM PROTEIN
1ut7_B3e-551216015168NO APICAL MERISTEM PROTEIN
3swm_A3e-551216018171NAC domain-containing protein 19
3swm_B3e-551216018171NAC domain-containing protein 19
3swm_C3e-551216018171NAC domain-containing protein 19
3swm_D3e-551216018171NAC domain-containing protein 19
3swp_A3e-551216018171NAC domain-containing protein 19
3swp_B3e-551216018171NAC domain-containing protein 19
3swp_C3e-551216018171NAC domain-containing protein 19
3swp_D3e-551216018171NAC domain-containing protein 19
4dul_A3e-551216015168NAC domain-containing protein 19
4dul_B3e-551216015168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064615001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892920.0AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
GenBankAC1896510.0AC189651.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS011C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141320.10.0PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-113NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A078HH970.0A0A078HH97_BRANA; BnaA04g19530D protein
TrEMBLA0A397ZPI60.0A0A397ZPI6_BRACM; Uncharacterized protein
TrEMBLM4DZA90.0M4DZA9_BRARP; Uncharacterized protein
STRINGBra021856.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-109NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]