PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064718001
Common NameGSBRNA2T00064718001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 861aa    MW: 95749.1 Da    PI: 6.5099
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064718001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.7e-42131208178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqve+Ceadls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  GSBRNA2T00064718001 131 VCQVESCEADLSKVKDYHRRHKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 208
                          6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-34124193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.513129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-39131210IPR004333Transcription factor, SBP-box
PfamPF031107.1E-31132205IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.8E-7646752IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-7648749IPR020683Ankyrin repeat-containing domain
CDDcd002048.67E-9651749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MEARIEGEGQ HFYGYRAMDV GKRSVEWDLN DWKWDGDLFI ATPLNPGVSQ TMGRQFFPLG  60
NSSNTSSSCS DEGNDNTREV EKRRRAAATG EDGGGGGLSL KLGENGYDLN GEREGKKTKL  120
GGGSGTNHRS VCQVESCEAD LSKVKDYHRR HKVCEMHSKA TSALVGGIMQ RFCQQCSRFH  180
VLEEFDEGKR SCRRRLAGHN KRRRKTNPEP AANGNPLSDD NQSSNYLLIC LLKILSNMHS  240
ANGSSGDQDL MPHLLKSLVS HAGEQLGKNL VELLLQGGSG LLAAPQEDSK QAPELPRQEL  300
YANLERSSPP TTTTNPATSS PDYPSWIHQT SRNSDSASDQ SPSSSSEDAQ MRTGRIVFKL  360
FGKEPNDFPP VLRGQILDWL SHTPTDIESY IRPGCIVLTI YLRQAETAWE ELSDDMGFSL  420
SKLLDLSDDP LWTSGWIYVR MQNQYAFVFD GQVLVDTSLP LRSHDYSHII SVRPLAVAAA  480
TGKAQFTVKG INLRRPGTRL LCAVEGKYLI QENDDLKESN ECVSFSCDLP ITSGRGFMEI  540
EDQGGLSSSF FPFIVVEEDD VCSEIRILET TLEFTDTDSA KLAMEFIHEL GWLLRRSKLG  600
VFSLARFKWL IEFSMDREWC AVIRKLLNMF FEGAVGYSSS DAAALSELCL LHRAVRKNSK  660
PMVEMLLRYV VPNQQRIHSL FRPDAAGPAG LTPLHIAAGK DGSEDVLDAL TEDPSMVGIE  720
AWRTSRDTTG FTPEDYARLR GHFSYIHLIQ RKINKKSATE DHVVVNIPAS SISDREQKET  780
KSGSSALEIT HGNHKLQCKL CDHKLVYGTA RRSVAYRPAM LSMVAIAAVC VCVALLFKSC  840
PEVLYVFQPF RWELLDYGTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-32122205184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.219070.0leaf| microspore-derived embryo| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064718001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691736.10.0squamosa promoter-binding-like protein 1 isoform X1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A078HLP00.0A0A078HLP0_BRANA; BnaC04g00420D protein
STRINGBo4g005730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]