PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064764001
Common NameGSBRNA2T00064764001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31180.5 Da    PI: 9.9879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064764001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.93.1e-24655251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +++++s + +++s+R+++i+KKA+ELS+LC++ v+vi+++++g+l+++++
  GSBRNA2T00064764001  6 SSSSNSLAATSLSNRLKTIFKKASELSILCQVAVSVIYYGPNGELKTWPK 55
                         78999*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0011456IPR002100Transcription factor, MADS-box
PfamPF003192.0E-131553IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.541557IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-141583IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVS VIYYGPNGEL KTWPKEKEVV  60
KDMALRYKAA TKRKKSSNLQ DFLEGKIRVL EAKKQRNTNL VHQTVQPSNP SKCSLYLYNH  120
DDATLSQLPL SASHSNQLIN YQNHLRMQQQ RLYDPCVSNT QGHPALLSVQ ESRLKNQLMQ  180
QQEAYGSHHN VRMMNNTTNS KVLGHPCPLK TIPKEFSFDL QKNPNDDMVG RPKYSQDFPN  240
LFLAYADIPQ LQTSSLPSIH QTIPNINLIP DNSRCP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064764001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130508.11e-139PREDICTED: agamous-like MADS-box protein AGL75
RefseqXP_022565274.11e-139agamous-like MADS-box protein AGL75
SwissprotQ9FLL03e-39AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078HJG90.0A0A078HJG9_BRANA; BnaAnng04820D protein
STRINGBra031864.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.11e-77AGAMOUS-like 78
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]