PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00064797001

Common Name

GSBRNA2T00064797001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 205aa MW: 23605.9 Da PI: 9.1103

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00064797001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.7	8.9e-12	86	146	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 k+ + +rk +NRe+ArrsR +K+++++ L+ +L +eN++L ++l +++ +e GSBRNA2T00064797001 86 KDERQKKRKKSNRESARRSRMKKQKYLDDLRSQLNQLNTENRELENQLRYVMHHCQGANME 146 4556678999***********************************9999999999866555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.0E-10	84	139	No hit	No description
SMART	SM00338	3.2E-13	85	149	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.6E-9	87	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.864	87	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	89	140	No hit	No description
CDD	cd14702	1.11E-16	90	141	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSSILPGFLS QQILANHLQT LETRFTPWDD ASDIFSIFNS PVCPVEVNPA VEKTNSCQVL 60 NKSDPCPGME DRPSNLTGLN VFFPKKDERQ KKRKKSNRES ARRSRMKKQK YLDDLRSQLN 120 QLNTENRELE NQLRYVMHHC QGANMENDRL RVENQILHEK LMSLRQALVL RQIQQSSTCA 180 TWSCVNSTVV TVHQNPSMLR DHVI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	107	QKKRKKSNRESARRSRMKK
2	90	94	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00064797001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619717.1	1e-132	PREDICTED: regulatory protein opaque-2-like
TrEMBL	A0A078HJJ0	1e-150	A0A078HJJ0_BRANA; BnaAnng05020D protein
TrEMBL	A0A398AJZ8	1e-150	A0A398AJZ8_BRACM; Uncharacterized protein
STRING	Bo2g168170.1	1e-131	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	8e-37	basic leucine-zipper 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]