PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00065107001

Common Name

GSBRNA2T00065107001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 259aa MW: 28875.7 Da PI: 6.2971

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00065107001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H GSBRNA2T00065107001 83 FQCKACKKVFASHQALGGHRASH 105 89**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.3E-9	82	107	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.4E-6	82	105	No hit	No description
PROSITE profile	PS50157	10.014	83	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.098	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:1.10.601.10	1.8E-4	116	152	No hit	No description
SuperFamily	SSF57667	6.4E-6	158	185	No hit	No description
Pfam	PF13912	1.0E-12	162	186	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.65	163	185	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	163	185	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MQNSSCIDLV MFSSRGQHDE GNMSRPPWKR KRSNHHLNLY PNEDEELANC LVLLSNSGNA 60 YNNNKHGHGK SKTVKKQKTA HVFQCKACKK VFASHQALGG HRASHKKVKG CFASQDKEEE 120 EEEDEYKEDD DEEEEDEDAE EEEEEDKPTA AAHIIARKRS NAHECTVCHR VFSSGQALGG 180 HKRCHWLTPS TYLRMTPLHD SSAVRSQALD QPSLDLNLAC QEYSVDPTTM SVGRDGGGNI 240 HNATSSNSWL KLASGDWS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00065107001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022566803.1	0.0	zinc finger protein ZAT2-like
TrEMBL	A0A078HJM5	0.0	A0A078HJM5_BRANA; BnaCnng09030D protein
TrEMBL	A0A3P6GMD3	0.0	A0A3P6GMD3_BRAOL; Uncharacterized protein
STRING	Bo8g118200.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13895	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	1e-24	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]