PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065204001
Common NameGSBRNA2T00065204001, LOC106414381
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 354aa    MW: 39424.1 Da    PI: 6.4424
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065204001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.13e-31195249155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rW+peLH++F+eav++L G+ekAtPk+++++m+v+gLt+++vkSHLQkYR+
  GSBRNA2T00065204001 195 KPRMRWSPELHDCFLEAVKKLDGPEKATPKAVMKMMSVEGLTIYQVKSHLQKYRI 249
                          79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.904192252IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-29193250IPR009057Homeodomain-like
SuperFamilySSF466891.54E-17194250IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-25195250IPR006447Myb domain, plants
PfamPF002491.4E-9197248IPR001005SANT/Myb domain
PfamPF143792.3E-21287333IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNSHSLWSID GGNTPCSSSS LSPLHNFLNL HPTETTTTSF QFKPSRHFSN GSFSRSSAFC  60
NLSSSSSSDT QKHLGTTLPF LSNPSTERSP AAASFSEEDL LSIPYEEEVD TSFLSLHGDG  120
GLQDLDNFSL SEEQMALQFL SDELQLAITD RAQTPRLDEI YQVTGSSPGQ KCIPSAMPVL  180
SQQPSPGGTE AVNQKPRMRW SPELHDCFLE AVKKLDGPEK ATPKAVMKMM SVEGLTIYQV  240
KSHLQKYRIA KHMPERKEEK KSGGNPEEKK PASNTNGEAN GRKKGAIQLT EALRMQMEVQ  300
KQLHQQLEVQ RSLQLRIEEH AKYLEKILDE QRKSTSKQDD ECETSLKRPR LEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-22195252259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065204001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710505.10.0myb family transcription factor PHL6
SwissprotQ949U21e-109PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A078JPH10.0A0A078JPH1_BRANA; BnaCnng55690D protein
TrEMBLA0A3P6GLR70.0A0A3P6GLR7_BRAOL; Uncharacterized protein
STRINGBo6g035910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1913667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-105G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]