PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065904001
Common NameGSBRNA2T00065904001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 275aa    MW: 30342.5 Da    PI: 6.8481
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065904001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.91.1e-152686257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         r+R+++++eq+ +Le+ F++   +p ++e  ++ kkl     + +++V++WFqNrR + ++
  GSBRNA2T00065904001 26 RTRWSPKPEQILILESIFNSgIVNPPKDETVRIRKKLekfgAVGDANVFYWFQNRRSRSRR 86
                         89*****************99*************************************997 PP
2Wus_type_Homeobox106.91.2e-342588265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         +rtRW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
  GSBRNA2T00065904001 25 VRTRWSPKPEQILILESIFNSGIVNPPKDETVRIRKKLEKFGAVGDANVFYWFQNRRSRSRRRQ 88
                         589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-132292IPR009057Homeodomain-like
PROSITE profilePS5007111.3862287IPR001356Homeobox domain
SMARTSM003892.0E-52491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-82592IPR009057Homeodomain-like
PfamPF000463.0E-132686IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDQEGAPQSR QGRSPSATTN STEPVRTRWS PKPEQILILE SIFNSGIVNP PKDETVRIRK  60
KLEKFGAVGD ANVFYWFQNR RSRSRRRQRQ LQAANAAAIA TRGVEDPQHM TTVSMHHPYR  120
NNEIDLGFGS CSNSSANYLF NESSSQVSSF LLGLSSSSTN GGCESNNGMG DLFTMYGHES  180
DHHHFHHPQH SSNDASISSP SDQNSSIHYQ QGLMTVFING VPTEVTNGAI DMKAMFGEDL  240
VLLHSSGLPL PTDEFGFLIS LQHGQSYFLV PRQT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065904001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121050.10.0PREDICTED: WUSCHEL-related homeobox 12
SwissprotQ8GY251e-119WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLA0A078HLD30.0A0A078HLD3_BRANA; BnaA10g16970D protein
STRINGBra002108.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.22e-99WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]