PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00066232001

Common Name

GSBRNA2T00066232001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 303aa MW: 34317.4 Da PI: 5.2335

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00066232001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	101.5	7.5e-32	38	132	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++r+w+e+De+++L+Gl++++ kt +ps d+d+f+ fv++s+++++sk+ql++K+r+L++Kf +++++++g++p f++ d+++f++s GSBRNA2T00066232001 38 IKRIWNEDDELSILKGLVEYRVKTRHDPSFDWDGFFCFVQGSVHVRFSKEQLFSKVRKLRRKFVLHMERIDRGEDPLFTRLTDSQAFGYS 127 68************************************************************************************** PP DUF573 93 kkiWg 97 ++iWg GSBRNA2T00066232001 128 NMIWG 132 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-26	39	132	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MKGLNFSDTS LQNSPSEEVS TKKNKNKNKK KKLASPVIKR IWNEDDELSI LKGLVEYRVK 60 TRHDPSFDWD GFFCFVQGSV HVRFSKEQLF SKVRKLRRKF VLHMERIDRG EDPLFTRLTD 120 SQAFGYSNMI WGLNQAEVAA NAGGTEKAPG DTQEDEHLDN AGHVNYNGVE SSKLDGKESE 180 FANGGMESVM QIESDENGFR ENGRVSNDEP VNENGAEKGE LDGKETDDDE LRVVEDAFET 240 TILQGLSDWQ MKLQLKKLMM NLGTEKRKEL SNEWKALCSE EVKLKIKKLR FTVKLVEAAN 300 DG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21651	0.0	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269\|PubMed:18162594}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00066232001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022545809.1	0.0	GLABROUS1 enhancer-binding protein isoform X1
Swissprot	Q8VYD2	8e-71	STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBL	A0A078HL29	0.0	A0A078HL29_BRANA; BnaA05g12910D protein
STRING	Bra039500.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	1e-65	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	106451550

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]