PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00066271001

Common Name

GSBRNA2T00066271001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 241aa MW: 26067.4 Da PI: 8.1633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00066271001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.9	3.3e-28	4	105	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyf........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++dC+++p++ ++ ++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg++++ GSBRNA2T00066271001 4 SCNGCRVLRKGCNQDCTIRPCLqwiksadsQHAAANATLFLAKFYGRAGLLNLIESGPNHLRPAIFRSLLYEACGRIVNPVDGSVGLMWS 93 6*******************9999865444446999************************************************ PP DUF260 83 lqqqleqlkael 94 +++ +q+++++ GSBRNA2T00066271001 94 GNWSQCQAAVDA 105 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.312	3	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-22	4	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQHAAANA TLFLAKFYGR AGLLNLIESG 60 PNHLRPAIFR SLLYEACGRI VNPVDGSVGL MWSGNWSQCQ AAVDAILNGL PITHTPLASA 120 SASHQIIPPH RTYDIRHVAK DPTTGGDSSE SLALAPRVNG NKAKTKTGRL KRLAETVDFQ 180 LGECSHDTWQ LQCSGATHGY GQLALENVEN RREAPLNQSS NLGRDDQVDT NEVGLELRLG 240 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.1496	2e-99	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00066271001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591058.1	1e-175	PREDICTED: LOB domain-containing protein 42
Refseq	XP_013702916.1	1e-175	LOB domain-containing protein 42
Swissprot	Q9CA30	1e-148	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A078HP88	1e-178	A0A078HP88_BRANA; BnaC06g30110D protein
STRING	Bo6g106960.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-151	LOB domain-containing protein 42

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]