PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066275001
Common NameGSBRNA2T00066275001, LOC106402408, LOC106402415
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 302aa    MW: 33632.4 Da    PI: 4.7158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066275001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-14107154253
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                          +  GVr++k +g+W+AeIr+p     +  r +lg+f t+e A++a+   rk++
  GSBRNA2T00066275001 107 KPVGVRQRK-WGKWAAEIRHPI----TkNRTWLGTFETEEAAHQAYKDKRKEY 154
                          789*****9.**********73....359*********99*******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.7E-408265IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000189.24E-18106147No hitNo description
SMARTSM003801.8E-12107167IPR001471AP2/ERF domain
PROSITE profilePS5103216.779107164IPR001471AP2/ERF domain
PfamPF008475.8E-9107155IPR001471AP2/ERF domain
PRINTSPR003671.2E-5108119IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-14109159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-18110149IPR001471AP2/ERF domain
PRINTSPR003671.2E-5130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVGIREQLLL SDTKKPKRCN PQEKTQQSLR KVRILVNDPY ATDDSSSDEG ETKTRRIVRV  60
VNFPPLVESA APPRVEPTSV SSSQDSTKTT SKKAAAAGAS RPRLSKKPVG VRQRKWGKWA  120
AEIRHPITKN RTWLGTFETE EAAHQAYKDK RKEYDALLAT SNDSASVSET SQCSRSSPLE  180
QDTSASTPAL KEEIKITTTT AGVDSSSKEV LFGFNFAELP IPDLGFFAEE GQMGDLGFFT  240
EDHDQLNLDC LFTDDQFDDF SMLWFEDSGP SELPDWDFPD VEFESSFFFA DQHIPLKSFV  300
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.119390.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066275001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698581.10.0ethylene-responsive transcription factor ERF118-like
RefseqXP_013698582.10.0ethylene-responsive transcription factor ERF118-like
RefseqXP_013698584.10.0ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA273e-77EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A078HLX30.0A0A078HLX3_BRANA; BnaC06g30140D protein
STRINGBo6g106990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-72ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]