PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066650001
Common NameGSBRNA2T00066650001, LOC106431993
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 211aa    MW: 23484.4 Da    PI: 8.4094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066650001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-173080155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   +k+ r++lg++ tae Aa+a++ a ++l+g
  GSBRNA2T00066650001 30 KKYKGVRMRS-WGSWVSEIRAP---NKKIRIWLGSYSTAEAAARAYDVALLCLKG 80
                         59*****998.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-343194IPR001471AP2/ERF domain
PROSITE profilePS5103222.0493188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-303190IPR001471AP2/ERF domain
PfamPF008472.0E-103180IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-203189IPR016177DNA-binding domain
PRINTSPR003671.2E-83243IPR001471AP2/ERF domain
CDDcd000181.37E-273490No hitNo description
PRINTSPR003671.2E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVKQELNIKK EMSLSPPSSP KIKSKKNKIK KYKGVRMRSW GSWVSEIRAP NKKIRIWLGS  60
YSTAEAAARA YDVALLCLKG PQANLNFPSS ASSRLLLDEK THLSPKSIQK IAAQAANNSF  120
DLFAPSSSAD SSPFDHDQHP DDMQSLIGSF VDNRVSLMDP SSSWYDNDHN GMFFFDDGAP  180
FNYSPPLNST TNMVDGYFYE DADIPLWSFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-142893268ATERF1
3gcc_A8e-142893268ATERF1
5wx9_A1e-1331881472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142193e-86seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066650001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728287.11e-153ethylene-responsive transcription factor ERF012
SwissprotQ9SFE43e-92ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A078HPV41e-152A0A078HPV4_BRANA; BnaC08g20020D protein
STRINGBo8g071150.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-86ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]