PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066786001
Common NameGSBRNA2T00066786001, LOC106382744
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 226aa    MW: 25130.3 Da    PI: 7.1673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066786001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-2082132255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r +lg+++ta eAa+a++ a+ +l+g
  GSBRNA2T00066786001  82 HYRGVRRRP-WGKYAAEIRDP---NkKGSRLWLGTYDTAVEAARAYDLAAFELRG 132
                          7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-3281140IPR001471AP2/ERF domain
PfamPF008472.7E-1482132IPR001471AP2/ERF domain
CDDcd000182.40E-3082140No hitNo description
SuperFamilySSF541711.5E-2382142IPR016177DNA-binding domain
PROSITE profilePS5103225.23882140IPR001471AP2/ERF domain
SMARTSM003801.6E-3782146IPR001471AP2/ERF domain
PRINTSPR003672.2E-108394IPR001471AP2/ERF domain
PRINTSPR003672.2E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MATKQEALAI EFISQHLLTD FASQDHHLHS ETTPRTIGNH NPKPNSTLNR RKPPLPNLSV  60
PVSSTMKKPE EEEEEEEEEK RHYRGVRRRP WGKYAAEIRD PNKKGSRLWL GTYDTAVEAA  120
RAYDLAAFEL RGRKAILNFP LDVRATSESC FVGLGKRKRL KSFVAEEETV PVRVKAEEKE  180
SDTTVAEVEA VPLTPSSWKG VWDLGAGDGI FSVPPLTPTS PSSAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2681143466ATERF1
3gcc_A1e-2681143466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247170.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066786001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1712050.0HQ171205.1 Brassica napus ethylene response factor 56 (ERF56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678254.11e-165ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-100EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLA0A078JMW41e-163A0A078JMW4_BRANA; BnaC02g48800D protein
STRINGBo2g161480.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.13e-87ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]