PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066940001
Common NameGSBRNA2T00066940001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 149aa    MW: 16489.8 Da    PI: 8.2107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066940001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001338751254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         R d+  ++++ L++++ +      +K + a++L+ A +YI  L
  GSBRNA2T00066940001 38 RKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75
                         66777799********999.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1372675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-103788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-73790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEFSREAGMM MENKRSVCSL EESSIKRHKS DLSFSSKRKD KAGDRISALQ QIVSPYGKTD  60
TASVLQDALH YIEFLHEQVK VLSAPYLQTM TAATQEELEQ YSLRNRGLCL VPMEYTAGVA  120
QSNGADIWAP VKTPPSPAFG VKSQSPFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066940001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760401e-148AJ576040.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-alpha gene).
GenBankAK2302571e-148AK230257.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-23-B19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605593.11e-108PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU22e-94BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A078JM071e-107A0A078JM07_BRANA; BnaAnng25330D protein
STRINGBo8g005780.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.57e-97bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]