PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067109001
Common NameGSBRNA2T00067109001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 105aa    MW: 12088 Da    PI: 11.0197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067109001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.2e-0764104145
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 
                          s+y+G r +  +g + AeI dp +   + +f+lg f + eeAa+a
  GSBRNA2T00067109001  64 SRYSGARKRT-WGWFSAEISDPLK---KSQFWLGIFNSSEEAARA 104
                          6788888776.99999*****743...5***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-964104IPR016177DNA-binding domain
PROSITE profilePS5103213.78865104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1365104IPR001471AP2/ERF domain
SMARTSM003800.008565104IPR001471AP2/ERF domain
PRINTSPR003671.4E-56677IPR001471AP2/ERF domain
PRINTSPR003671.4E-588104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MIIGTFKATA GVLRYALGMV SLLFPILFWG IQRNPRNSFS FGYWCHFRFL NASCRYALRF  60
VKESRYSGAR KRTWGWFSAE ISDPLKKSQF WLGIFNSSEE AARA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067109001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078HNQ74e-70A0A078HNQ7_BRANA; BnaC01g34730D protein
STRINGBo1g121570.12e-70(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-16ethylene response factor 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]