PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067172001
Common NameGSBRNA2T00067172001, LOC106422315
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 21689.7 Da    PI: 5.5963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067172001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-193281255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++ a++kl+g
  GSBRNA2T00067172001 32 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDSAARKLYG 81
                         69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-313191No hitNo description
SMARTSM003805.9E-353295IPR001471AP2/ERF domain
PfamPF008477.1E-143281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-313290IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223291IPR016177DNA-binding domain
PROSITE profilePS5103222.0623289IPR001471AP2/ERF domain
PRINTSPR003672.9E-103344IPR001471AP2/ERF domain
PRINTSPR003672.9E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVGANKKQRT VHASSRKGCM RGKGGPDNAS CTYKGVRQRT WGKWVAEIRE PNRGARLWLG  60
TFDTAREAAL AYDSAARKLY GSEAHLNLPE SLRSYPETVL PGTQASHTPS SNTGGKSSDS  120
INEESPSSSN EMSSWGTTEE ISWEHMNADL PVTDDSSIWE EATMSLGFPW VHEGDDISPF  180
STCINGGYSN WDSFHSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-193394668ATERF1
3gcc_A7e-193394668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067172001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128106.11e-146PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_013718580.11e-146dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-113DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A078HN951e-145A0A078HN95_BRANA; BnaA02g17250D protein
TrEMBLA0A3P6A5U91e-145A0A3P6A5U9_BRACM; Uncharacterized protein
TrEMBLM4CVF31e-145M4CVF3_BRARP; Uncharacterized protein
STRINGBra008200.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-111ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]