PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067253001
Common NameGSBRNA2T00067253001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 318aa    MW: 35201.6 Da    PI: 10.0008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067253001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.69.2e-1571155186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++ + +Li+a  e++ +l+rg+lk+++We+v++ +       ++  ++ +qCk++++ ++k+yk++k ++++      s++++fd+l
  GSBRNA2T00067253001  71 CWSEKATGVLIDAWGEIHMELSRGNLKQKHWEKVAETVrskeeDNGKTPKTDVQCKNRIDTVKKKYKQEKLRSGR------SSWVFFDKL 154
                          7*************************************99988888899*********************99997......46******9 PP

             trihelix  86 e 86 
                          +
  GSBRNA2T00067253001 155 D 155
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2269157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADDEDQIRS HSDSPDPSSS PPPPSGKVTV TVAFPGPPQK TPDASPLALL PIQPSGGGGG  60
RPTGGGGRED CWSEKATGVL IDAWGEIHME LSRGNLKQKH WEKVAETVRS KEEDNGKTPK  120
TDVQCKNRID TVKKKYKQEK LRSGRSSWVF FDKLDRLIGS TAKISPAPPP PSGLGGGLHN  180
IPMGIPMGRG LNLYHQQGKA ETPRFGVNAS ESKRWPLRRK RNVSDSHSED SGGDDSLPPP  240
PPRQRKQGGG NKWREVSSAI MRFGEAYEQI ENAKLQQVVE MEKERLRFLK ELESQRMHFF  300
VKFQFELSQQ REENGKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866GGRPTGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067253001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643967.10.0trihelix transcription factor ASIL2-like
SwissprotQ9LJG83e-85ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A078HNZ10.0A0A078HNZ1_BRANA; BnaA01g29570D protein
STRINGBra021534.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-72sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]