PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067255001
Common NameGSBRNA2T00067255001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 306aa    MW: 34489.9 Da    PI: 10.0556
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067255001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1564149186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++ + +Li+a  +++ +l+rg+lk+++Weev++ +       ++  ++ +qCk++++ ++k+yk++k ++++     ss++++fd+l
  GSBRNA2T00067255001  64 CWSERATGVLIDAWGKIHMELSRGNLKQKHWEEVAETVrrkaeDNGKTPKTDVQCKNRMDTVKKKYKQEKLTRGR-----SSSWVFFDKL 148
                          7*************************************888877788999********************99998.....678******9 PP

             trihelix  86 e 86 
                          +
  GSBRNA2T00067255001 149 D 149
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-2362151No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADDDDQIRS HSDSPDPSSS SPPPPGKFTV TVASPAPPRQ KDPDASPLAL LPIKSSGGGG  60
REDCWSERAT GVLIDAWGKI HMELSRGNLK QKHWEEVAET VRRKAEDNGK TPKTDVQCKN  120
RMDTVKKKYK QEKLTRGRSS SWVFFDKLDR LIGSTAKISS PPPPRGLLKI PMGKSWNLYH  180
RQGEAETPRF GDKARVKAAS KSWFDSDSES EATMSEDSGD RLPPPPLSKR KQGGGNTWRE  240
VSSAIMRFGE AYEQIENAKL RQVAEMEKER LRFFKEVEMQ RMQFFVKIQF ELSQLKQQRE  300
ENGKQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067255001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510472.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG83e-66ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A078HND70.0A0A078HND7_BRANA; BnaA01g29550D protein
STRINGBra021536.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-68sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]