PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00067587001

Common Name

GSBRNA2T00067587001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 423aa MW: 47719.6 Da PI: 8.4202

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00067587001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.4	1e-09	161	189	18	46
HHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgkl 46 +++lKKA+ELS LC+++v++i f +g+l GSBRNA2T00067587001 161 HTVLKKAFELSELCGVNVCIIWFDREGNL 189 699********************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.09E-9	162	232	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-6	163	189	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MKKLSVRKET TLFKKPSSSL YKARVATMTP NYGFRTAAPA HVTQLFSKKI RRCTEPVRAC 60 SYEEGEVRDK TGLVPCLKKR HVVTRCELPL VFVPATDEYT CNKMFSLKFQ TGLKLSHLST 120 SQASYFIYLC SSQAISICAF KLSVSAPSTL TKSSIVSVCP HTVLKKAFEL SELCGVNVCI 180 IWFDREGNLV KTCPENEEAK VRAMAERYSM LSEQERNKKS TNLSGFLNKK MMDDKKESLK 240 KKDNKFSGKV SEFMDSLQSR FQTLQESLFL VDQQPKEASA VVSTDLSSNH PSTTTTSLSK 300 FSILLYNHDN GDFTELANNS SGFEQPSSCN QGYGSNYLDL LLGEQQRMMM ASCNNFDIPL 360 PFSNTFHQFD HEFMQQTQPV QNESWDIWDN LLLSPLCISH KDTLLVEQKF WGVVNGIVVV 420 RD*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MKKLSVRKET TLFKKPSSSL YKARVATMTP NYGFRTAAPA HVTQLFSKKI RRCTEPVRAC  60
SYEEGEVRDK TGLVPCLKKR HVVTRCELPL VFVPATDEYT CNKMFSLKFQ TGLKLSHLST  120
SQASYFIYLC SSQAISICAF KLSVSAPSTL TKSSIVSVCP HTVLKKAFEL SELCGVNVCI  180
IWFDREGNLV KTCPENEEAK VRAMAERYSM LSEQERNKKS TNLSGFLNKK MMDDKKESLK  240
KKDNKFSGKV SEFMDSLQSR FQTLQESLFL VDQQPKEASA VVSTDLSSNH PSTTTTSLSK  300
FSILLYNHDN GDFTELANNS SGFEQPSSCN QGYGSNYLDL LLGEQQRMMM ASCNNFDIPL  360
PFSNTFHQFD HEFMQQTQPV QNESWDIWDN LLLSPLCISH KDTLLVEQKF WGVVNGIVVV  420
RD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2431	5e-43	bud\| flower\| leaf\| microspore\| microspore-derived embryo\| root\| seed\| stem\| vegetative meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00067587001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078JR44	0.0	A0A078JR44_BRANA; BnaCnng56720D protein
STRING	Bo6g014360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15639	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26950.1	2e-28	AGAMOUS-like 93

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]