PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00067778001

Common Name

GSBRNA2T00067778001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 422aa MW: 45517.6 Da PI: 5.103

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00067778001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8e-07	366	388	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f + C+ G++C F H+ GSBRNA2T00067778001 366 KPCMYFNTSRGCRNGANCLFQHD 388 69********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.324	362	390	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-4	366	388	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	366	389	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-6	367	394	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MRALHKSKRV SWPPDFKLCQ QVRLFISEDS PSQVGSESQD HFQAKSSGAA HLSDDNLPPG 60 FGGLLSPNES IKLSDIPVIK WQCSVQILLD DEWRMVAGDE SKEAEAQNQR ELRVLEAFYP 120 GASSIPPNPW VPADVDTSDY DDQQTLVIPI LVVEDDDVAA DTASELPTQS GVDVGTVPSI 180 TNENTSTSSS LPAASEIMAA LAALSNSKEQ GGSMIDKYLL IKILSNPKMV ENLVANCGSS 240 AASVSSNATH ETNGVVATAT TPACSNGQYN PQPAVSHIPP PIVYPRQVPS DQSNYGAPPP 300 PARDASYYQS LIQQHGGERQ EAPPLPVQQH LGGYRYSLQP GAGGGGPNPE IVNSNRPRDS 360 KPKIMKPCMY FNTSRGCRNG ANCLFQHDAT AAYQPRNVNN NRNINNNPEM QSAKRMRFDR 420 V*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MRALHKSKRV SWPPDFKLCQ QVRLFISEDS PSQVGSESQD HFQAKSSGAA HLSDDNLPPG  60
FGGLLSPNES IKLSDIPVIK WQCSVQILLD DEWRMVAGDE SKEAEAQNQR ELRVLEAFYP  120
GASSIPPNPW VPADVDTSDY DDQQTLVIPI LVVEDDDVAA DTASELPTQS GVDVGTVPSI  180
TNENTSTSSS LPAASEIMAA LAALSNSKEQ GGSMIDKYLL IKILSNPKMV ENLVANCGSS  240
AASVSSNATH ETNGVVATAT TPACSNGQYN PQPAVSHIPP PIVYPRQVPS DQSNYGAPPP  300
PARDASYYQS LIQQHGGERQ EAPPLPVQQH LGGYRYSLQP GAGGGGPNPE IVNSNRPRDS  360
KPKIMKPCMY FNTSRGCRNG ANCLFQHDAT AAYQPRNVNN NRNINNNPEM QSAKRMRFDR  420
V*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28287	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00067778001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586462.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6-like
Swissprot	Q56XU4	0.0	C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A078HN87	0.0	A0A078HN87_BRANA; BnaC05g15400D protein
STRING	Bo5g027940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5614	14	18

Publications ? help Back to Top
Mastrangelo AM, et al. Low temperature promotes intron retention in two e-cor genes of durum wheat. Planta, 2005. 221(5): p. 705-15 [PMID:15666155] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]