PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00068434001

Common Name

GSBRNA2T00068434001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 212aa MW: 24785.8 Da PI: 8.1459

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00068434001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.2	1.8e-28	155	204	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ GSBRNA2T00068434001 155 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 204 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-13	152	205	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-24	153	204	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-21	155	206	IPR006447	Myb domain, plants
Pfam	PF00249	6.2E-6	156	205	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MELFPSQPDL YLKINRRREE QEEEDYKEQE EVQRRLLFGS KASDSDRKAS DHLIHTLQFT 60 SNNEPTKIDH NQERMESLDQ DLRSNFMVRP IRGIPLHQNQ ILDHYYYSPT PPFFFSEVNG 120 QHANPSYSYN LHHRHHRQAQ PQAQRLTAKR GVRAPRMRWT TTLHAHFVHA VQLLGGHERA 180 TPKSVLELMD VQDLTLAHVK SHLQVILSIS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-14	156	204	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269\|PubMed:14561401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00068434001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183492	0.0	AC183492.1 Brassica oleracea Contig G, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638954.1	1e-140	PREDICTED: probable transcription factor KAN3
Swissprot	Q941I2	1e-106	KAN3_ARATH; Probable transcription factor KAN3
TrEMBL	A0A078JQR1	1e-155	A0A078JQR1_BRANA; BnaAnng25890D protein
STRING	Bo1g017770.1	1e-139	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13984	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	2e-89	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]