PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068670001
Common NameGSBRNA2T00068670001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 295aa    MW: 33701.3 Da    PI: 8.9001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50371611128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrFhPtdeelv++yL+++++++++++  vi+e+d+yk++Pw+Lp ++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk
  GSBRNA2T00068670001  37 LPAGFRFHPTDEELVKFYLCRRCASEPITV-PVIAEIDLYKFNPWELPDMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADK 125
                          799**************************9.89***************6666689*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++ +   ++ g+kk Lvfy g+ap+g+kt+W+mheyrl
  GSBRNA2T00068670001 126 PIGK--PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 161
                          **98..778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6129189IPR003441NAC domain
PROSITE profilePS5100559.00937189IPR003441NAC domain
PfamPF023653.3E-2638161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MCGSRTSSSI KPPRTHSLLL DYNRRLKTNK MKAELNLPAG FRFHPTDEEL VKFYLCRRCA  60
SEPITVPVIA EIDLYKFNPW ELPDMALYGE KEWYFFSHRD RKYPNGSRPN RAAGTGYWKA  120
TGADKPIGKP KTLGIKKALV FYAGKAPRGV KTNWIMHEYR LANVDRSASS NRMNNLRLDD  180
WVLCRIYNKK GTVEKYYPAD EKERVMMVIT NTTTTSDSKC SSHVISPDVT CSSEVQSESK  240
WVDLEDAFDA SMFGSLLQND AFVPQFPYQS DFAAMFEDPL EQKPFFNWSF GSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-833219510174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.8020.0flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root cortex, root caps and sepals. Not detected in imbibed seeds. {ECO:0000269|PubMed:19176720}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068670001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747660.0KF974766.1 Brassica napus NAC transcription factor 102-1 (NAC102-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620870.10.0PREDICTED: NAC domain-containing protein 102-like
SwissprotQ8H1151e-161NA102_ARATH; NAC domain-containing protein 102
TrEMBLA0A078HQC50.0A0A078HQC5_BRANA; BnaC02g42720D protein
TrEMBLA0A0D3AYK80.0A0A0D3AYK8_BRAOL; Uncharacterized protein
STRINGBo2g165880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.11e-164NAC domain containing protein 102
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]