PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068946001
Common NameGSBRNA2T00068946001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 160aa    MW: 18218.7 Da    PI: 4.2836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068946001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.2e-16461201898
                          --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +p  f  e+     + + t+ l d  grsW++++  +k++++++lt GW++Fvk+n+L++g ++ F +d +++f  +v +f 
  GSBRNA2T00068946001  46 IPLAFN-EYfPD--PLPNTVELLDYYGRSWTIRM--KKRGETVFLTVGWENFVKDNELEDGKMMEFIYDCDRTF--YVVIFG 120
                          677776.45233..4788****************..*******************************9987777..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.59229122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-1833121IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-1138122IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-2042122IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-1445119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAAPDEDQRF IKPFISHKSA KSLSLVLCVA AIIVCSERLI LYVKAIPLAF NEYFPDPLPN  60
TVELLDYYGR SWTIRMKKRG ETVFLTVGWE NFVKDNELED GKMMEFIYDC DRTFYVVIFG  120
HGGVSELRVF PQAVVDVGDY ATGEEEGEEE EEEEKNKSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-4511213101At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068946001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559462.11e-84B3 domain-containing protein At1g16640-like
SwissprotQ9FX772e-50Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLA0A078HTJ21e-114A0A078HTJ2_BRANA; BnaC05g12720D protein
STRINGBo5g022070.15e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-52B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]