PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068988001
Common NameGSBRNA2T00068988001, LOC106418127
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 454aa    MW: 51413.4 Da    PI: 4.7347
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068988001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3402.26.6e-123283351353
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          ++lk+rmwkdq+l+++lk++k++++   ++ ++   s ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgk  +g+sds
  GSBRNA2T00068988001  28 DDLKRRMWKDQNLMEKLKQQKRDNT---DV-VS--LSTHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKAITGSSDS 111
                          79********************976...33.33..35689************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          Lr+WWke+v fd+n+p+a+++y    l+++ ++  + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWPtG+elw
  GSBRNA2T00068988001 112 LRRWWKENVDFDQNAPNAVADY--LTLAAAAAELIEKEPSSLLHMLQELQDTTLGSLLSALMQHCAPPQRRFPLEKGIAPPWWPTGTELW 199
                          **********************..345555555667799*************************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXX CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkq 270
                          wge+g++++qg ppy+kphdl+k wkvsvL+avikhmsp++ ++r+l+rqsk+lqdkm+ake++++++vlnqee+++            +
  GSBRNA2T00068988001 200 WGEQGAAHEQGVPPYRKPHDLRKSWKVSVLAAVIKHMSPNLGRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL------------N 277
                          **************************************************************************988............7 PP

                          XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
                 EIN3 271 spkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                           +++++s++q+      + sk                 krk     +++++ ++ ++tcq+s++++s+ +l+f dkns++ +e
  GSBRNA2T00068988001 278 IKDLKISEDQEA-----SGSK----------------TKRK----GDNIMEPSKSVYTCQNSSCPKSDASLGFMDKNSRTGHE 335
                          889999999762.....2222................2444....45667777778************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.0E-11828273No hitNo description
Gene3DG3DSA:1.10.3180.103.8E-68149277IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.31E-59152276IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVEVEELEPL SPVEDGDEGE EEEDISYDDL KRRMWKDQNL MEKLKQQKRD NTDVVSLSTH  60
RAEASRRKKM ARSQDSVLKY MMKIMEVCKA KGFVYGIVPE KGKAITGSSD SLRRWWKENV  120
DFDQNAPNAV ADYLTLAAAA AELIEKEPSS LLHMLQELQD TTLGSLLSAL MQHCAPPQRR  180
FPLEKGIAPP WWPTGTELWW GEQGAAHEQG VPPYRKPHDL RKSWKVSVLA AVIKHMSPNL  240
GRVRRLARQS KCLQDKMMAK ETDTWSRVLN QEEALLNIKD LKISEDQEAS GSKTKRKGDN  300
IMEPSKSVYT CQNSSCPKSD ASLGFMDKNS RTGHEIQCLY GSSSQSTGDT SSVLETAPSI  360
GTNTTSEDDY CASSSAMGKR DNDAHSNWLD YLWFERMQQE FNCSRRLEDV DDDTAVDLNQ  420
LLESDQSSDN VDQNNFSVWD MGCEDKDIYM FDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-591532754126Protein ETHYLENE INSENSITIVE 3
4zds_B1e-591532754126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00068988001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400890.0AC240089.1 Brassica oleracea clone BOT01-64A15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616535.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
RefseqXP_013714239.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A078HTL30.0A0A078HTL3_BRANA; BnaC02g00520D protein
TrEMBLA0A0D3AID80.0A0A0D3AID8_BRAOL; Uncharacterized protein
STRINGBo2g009710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]