PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069003001
Common NameGSBRNA2T00069003001, LOC106417968
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 338aa    MW: 37976.6 Da    PI: 6.4211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069003001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21.1e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+lv++v+++G  +W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00069003001 14 KGPWTPEEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding55.71.1e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E++ ++++++ lG++ W+tIa++++ gRt++++k++w+++l
  GSBRNA2T00069003001  67 RGKFSPDEEQTILNLHAVLGNK-WSTIANHLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.953961IPR017930Myb domain
SuperFamilySSF466892.42E-3211108IPR009057Homeodomain-like
SMARTSM007179.1E-161363IPR001005SANT/Myb domain
PfamPF002493.6E-181461IPR001005SANT/Myb domain
CDDcd001678.54E-131661No hitNo description
PROSITE profilePS5129426.94762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2865117IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1667112IPR001005SANT/Myb domain
CDDcd001673.21E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRSPSSDDS GLKKGPWTPE EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPDEEQTILN LHAVLGNKWS TIANHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHRPRT DIFSSLSQLM SLSSNLRGFV DMQQQFPNGQ DQSILKLQTE MAKLQLFQYL  180
LQPPTMNNNI NNPNDFDILS LLNTIASFQD TTSNNLDLVS YLQDFNNLPS LKTLNSNIGP  240
SSVFPQIPED NHFKFCNERE NLPVSPVWLS DPSNSNQNML PSLAPSSAVS DDMIRNQYVI  300
DHVNSNITSS SQESGASASA AWPDHLLDDS IFSDIIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069003001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756600.0KM975660.1 Brassica napus MYB transcription factor 92.1 (MYB92.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620786.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_013620787.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_022551061.10.0transcription factor MYB41
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A078HTL90.0A0A078HTL9_BRANA; BnaC02g00420D protein
TrEMBLA0A0D3AIE70.0A0A0D3AIE7_BRAOL; Uncharacterized protein
STRINGBo2g009800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-174myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]