PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069183001
Common NameGSBRNA2T00069183001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LSD
Protein Properties Length: 141aa    MW: 15109.9 Da    PI: 8.0004
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069183001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1451.8e-143862125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lL+YP GA+sV+Ca+C++V
  GSBRNA2T00069183001 38 CSGCRNLLMYPVGASSVCCAVCNAV 62
                         ************************9 PP
2zf-LSD146.94.6e-1577101125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          CggC+tlL+Y rGA+sV+C++C+tV
  GSBRNA2T00069183001  77 CGGCHTLLMYIRGATSVQCSCCHTV 101
                          ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.3E-143565IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-113862IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.6E-1475103IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-1277101IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPLPLAPYPT PPAPALSPSY TPPPLANGST GGQSQLVCSG CRNLLMYPVG ASSVCCAVCN  60
AVTAVPPPGT EMARLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEGLHL IYKHLHTCIY  120
IHVKSLCSNI YIYIYIYIYI Y
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069183001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1932951e-107AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550863.18e-71protein LOL1-like
SwissprotQ93ZB14e-52LOL1_ARATH; Protein LOL1
TrEMBLA0A078JQV75e-94A0A078JQV7_BRANA; BnaC05g51440D protein (Fragment)
STRINGBo01229s010.14e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-33lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]