PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069216001
Common NameGSBRNA2T00069216001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 201aa    MW: 21989.2 Da    PI: 7.1972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069216001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174062123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C + F++   L  H+++H
  GSBRNA2T00069216001 40 YACNFCRREFRSAQALGGHMNVH 62
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-63767No hitNo description
PfamPF139122.4E-54063IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MWNPSKVERL EDDDESWEVK AFEQDTKGNI SGTTWPPRSY ACNFCRREFR SAQALGGHMN  60
VHRRDRASKA HQGPAAAVAA RSGGRSRGGK KTFLSSCVLP TATLIIQSTA SNNEGLSHFY  120
QLQNPNSMFG HSSDTVNFHG SSSFPSSNLD FSVLNSPVEV PPRFIEYSTG DDESIGSMKE  180
TKRTSVGEPD LELRLGHNPP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-123562229superman protein
2l1o_A1e-123562229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069216001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136875.21e-149PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103860946
TrEMBLA0A078JNL81e-148A0A078JNL8_BRANA; BnaUnng02710D protein
TrEMBLM4D8281e-148M4D828_BRARP; Uncharacterized protein
STRINGBra012638.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-98C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]