PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069341001
Common NameGSBRNA2T00069341001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 262aa    MW: 29463.7 Da    PI: 6.7149
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069341001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.4e-1326661150
                         HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
               SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                         + +  R+++ilKKA ELS+LC+ e++vi +   g+l ++++
  GSBRNA2T00069341001 26 TNLLMRQETILKKAGELSTLCGNEICVIHYDRVGNLvRTWP 66
                         66778*************************99987636776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-4667IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.25861IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-92377IPR002100Transcription factor, MADS-box
PfamPF003192.0E-72961IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDSSSSRNKK VKLSVRKQTL FKKSSTNLLM RQETILKKAG ELSTLCGNEI CVIHYDRVGN  60
LVRTWPEDES QFVNKKMHDE KKRSPIEFSQ KVQDLEGSLV YKLQLLRDMM LHDDHHAEPD  120
QSITNLLMNG STSTEQDLSR GDVYNSTATG SLNHPSKYSI FMFNHENATL TQLPHSSLDQ  180
SLIPSCYNNL NDSRTLLGTQ GFNDNSNLST TQGFFNFGYD NNALPGEQVN FGYYNSLLGT  240
QGFGGYNNNL NYTQGFNNLC T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069341001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728700.0AC172870.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709481.10.0agamous-like MADS-box protein AGL53
TrEMBLA0A078HSC60.0A0A078HSC6_BRANA; BnaA09g34810D protein
STRINGBra028020.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2153425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.11e-33AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]