PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069411001
Common NameGSBRNA2T00069411001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 422aa    MW: 47728.6 Da    PI: 9.0825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069411001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0591112223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C  Cgk F+++  L  H+ +H
  GSBRNA2T00069411001  91 YCRECGKGFPSSKALCGHMASH 112
                          5*******************99 PP
2zf-C2H211.90.00068365387123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00069411001 365 HECPICFRVFKSGQALGGHKRSH 387
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-6636No hitNo description
Gene3DG3DSA:3.30.160.604.4E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157936IPR007087Zinc finger, C2H2
PfamPF139124.0E-5933IPR007087Zinc finger, C2H2
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.69990117IPR007087Zinc finger, C2H2
SMARTSM003550.01690112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.52E-691112No hitNo description
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139125.6E-592114IPR007087Zinc finger, C2H2
SuperFamilySSF576673.52E-6360387No hitNo description
PROSITE profilePS501578.974365387IPR007087Zinc finger, C2H2
PfamPF139123.5E-10365387IPR007087Zinc finger, C2H2
SMARTSM003550.14365387IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280367387IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MELCIEKRFV CKFCNKRFAC GKSLGGHIRT HMSNKNSADS DEDEHTKLMI DENGGQSSYG  60
LRENPKKNKR FVDQREMMAL KHHQHQLQLL YCRECGKGFP SSKALCGHMA SHSEREKIVM  120
DSQSDTEASL STIRRRSKRA VKHHHGSSIM NQYDAASSDE SEIEPEQEQM ALSLMMLSRD  180
DSGFKKGHNL VVNSFAESSD NNSVILETKS SSGEQLRKIF KVKESCKKDK LGVEVDHLRN  240
GEDNGYVSDN SDSGYFRNGP KKLDSDVTVD GFLRNKAAMG FNSSEDKSLN RFRTGSDRSS  300
TKYDLRKSRT SFPTYGRKKM RYEFTESVYD SGDQHSLETE SCAETIKIHS KPPMVKKAKK  360
KSKGHECPIC FRVFKSGQAL GGHKRSHFIG NHEHRTLVIQ QHQVAHEMHT LIDLNLPAPI  420
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069411001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894291e-153AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609661e-153HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022544484.10.0zinc finger protein ZAT4-like
TrEMBLA0A078HRC50.0A0A078HRC5_BRANA; BnaA07g09440D protein
STRINGBra012450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]