PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069535001
Common NameGSBRNA2T00069535001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 522aa    MW: 58204.1 Da    PI: 7.6973
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069535001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-1873119148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEde l +av ++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  GSBRNA2T00069535001  73 KGGWTPEEDETLRQAVDKYKGKRWKKIAEYFP-ERTEVQCLHRWQKVL 119
                          688*****************************.************986 PP
2Myb_DNA-binding582.1e-18125171148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd ++v++vk++G+  W++Ia+ ++ gR +kqc++rw+++l
  GSBRNA2T00069535001 125 KGTWTQEEDGIIVELVKKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 171
                          799*****************************.*************97 PP
3Myb_DNA-binding55.61.2e-17177220146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WTteE+  l++a + +G++ W+ Ia+ ++ gRt++ +k++w++
  GSBRNA2T00069535001 177 KDAWTTEEETALINAQRTHGNK-WAEIAKVLP-GRTDNAIKNHWNS 220
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2868119IPR017930Myb domain
SuperFamilySSF466893.59E-1669126IPR009057Homeodomain-like
SMARTSM007172.9E-1672121IPR001005SANT/Myb domain
PfamPF002498.1E-1773119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2575135IPR009057Homeodomain-like
CDDcd001672.04E-1476119No hitNo description
PROSITE profilePS5129430.89120175IPR017930Myb domain
SuperFamilySSF466899.9E-31122218IPR009057Homeodomain-like
SMARTSM007171.9E-16124173IPR001005SANT/Myb domain
PfamPF002496.8E-17125171IPR001005SANT/Myb domain
CDDcd001672.45E-14127171No hitNo description
Gene3DG3DSA:1.10.10.605.4E-26136178IPR009057Homeodomain-like
PROSITE profilePS5129421.801176226IPR017930Myb domain
SMARTSM007171.8E-16176224IPR001005SANT/Myb domain
PfamPF002492.0E-15177220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-23179226IPR009057Homeodomain-like
CDDcd001671.52E-12179222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSSGSNPLAC SPEKEEEERS EMKIEILCME NKQPTPASSE GSASIFLYSP QLKTPAPASP  60
SHRRTSGPMR RAKGGWTPEE DETLRQAVDK YKGKRWKKIA EYFPERTEVQ CLHRWQKVLN  120
PELIKGTWTQ EEDGIIVELV KKYGPAKWSL IAKSLPGRIG KQCRERWHNH LNPGIRKDAW  180
TTEEETALIN AQRTHGNKWA EIAKVLPGRT DNAIKNHWNS SLKKKLDFYL ATCNLPPSAT  240
KIGDFADVDR DFKLSGATKP LKDSDSVTQS SSVNTDANED GVDHVHSSSD LLEESAVNEY  300
ACSPASVECK PQLPNLRPMS PRINSKDFVQ KKEENGLGTP RHGNLYYKSP LDFFYFPSEA  360
DLRRMYGYEC GCSPSAVSSS PVSLMITPPC NKDSGLAAAT RSPESFLREA ARTFPNTPSI  420
FRKRRKVVLA NKTDDEDDAV NSVAKGADQN ENSKDSAEIS TVGREALLLL ETVDDSNGST  480
FNASPPYRVR AKRRAVFKSR QLEFTSEKEN QPETSEEDKS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-66722265159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-66722265159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069535001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122788.10.0PREDICTED: myb-related protein 3R-1 isoform X1
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A397XPD90.0A0A397XPD9_BRACM; Uncharacterized protein
STRINGBra009597.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]