PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069732001
Common NameGSBRNA2T00069732001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27451.5 Da    PI: 5.1656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069732001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.81.4e-132664138
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                         k+ie+k  r+vtf+kRr g++ KA+EL+ L  ++++a++
  GSBRNA2T00069732001 26 KFIEDKAVRSVTFCKRRDGLFSKASELCLLSpATQIAIL 64
                         79****************************835577766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-121879IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.8861866IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-82040IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-1520106IPR002100Transcription factor, MADS-box
CDDcd002664.27E-222095No hitNo description
PfamPF003198.9E-122769IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-84055IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNVHTNDACF LTIIIMGGEK RKIDIKFIED KAVRSVTFCK RRDGLFSKAS ELCLLSPATQ  60
IAILATPPST NSHAGFYSFG HSSVDHVVSS LLHDQSPGDP TNQVENRRLG FWWEDQALER  120
LESVDELRDA TDAVTRMLNN VRLRLDAVKG NQRGGALVIH QEEARAPKIR NTNKEKTNQI  180
TNSESSCGLV IHQDEVPQLC NTNTNYKNEE TTTQVANSEG ASGSGSSVEK NDDILHIDDL  240
DIDDFFH*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069732001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013700597.11e-173agamous-like MADS-box protein AGL97
SwissprotQ9C6338e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078HRL90.0A0A078HRL9_BRANA; BnaC09g14350D protein
TrEMBLA0A3P6E5T20.0A0A3P6E5T2_BRAOL; Uncharacterized protein
STRINGBo9g043470.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.13e-68AGAMOUS-like 55
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]