PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00069970001
Common NameGSBRNA2T00069970001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 740aa    MW: 82556.1 Da    PI: 8.8603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00069970001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-11556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT +E+e l  +++++G+g Wk I r        ++R+  ++k++w+++
  GSBRNA2T00069970001  5 KLKWTGDEEEALRAGIEKHGPGKWKNILRDPEfahqlTNRSNIDLKDKWRNL 56
                         689***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.818162IPR017930Myb domain
SuperFamilySSF466895.61E-15363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-13457IPR009057Homeodomain-like
SMARTSM007174.3E-7459IPR001005SANT/Myb domain
PfamPF002491.8E-6556IPR001005SANT/Myb domain
CDDcd116601.39E-19757No hitNo description
SuperFamilySSF467855.99E-12125205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.3E-17126191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.8E-10127191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.022128202IPR005818Linker histone H1/H5, domain H15
PfamPF005384.8E-8130190IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF525401.13E-61346558IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.7E-70351571IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS511959.61354382IPR014014RNA helicase, DEAD-box type, Q motif
CDDcd002682.73E-101356556No hitNo description
SMARTSM004873.1E-56373570IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF002702.2E-40379540IPR011545DEAD/DEAH box helicase domain
PROSITE profilePS5119228.667385555IPR014001Helicase superfamily 1/2, ATP-binding domain
PROSITE patternPS000390501509IPR000629ATP-dependent RNA helicase DEAD-box, conserved site
PfamPF120231.7E-21695737IPR021899Protein of unknown function DUF3511
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004386Molecular Functionhelicase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MGNQKLKWTG DEEEALRAGI EKHGPGKWKN ILRDPEFAHQ LTNRSNIDLK DKWRNLCVAP  60
GTQCSNDKSR TRKVKEEGVT LASLSPTAAT ATPPSYPNSS SSSPATSLPR SASSDFSVDN  120
NFAVDNKNAP RYDAMIFEAI SELADPNGSD VGSIFSFIEP RHEVPPTFRR VLSSRLRRLA  180
AQGKLSKVSN SKPLLNFYKL PDGSETTTRT TPAPTPKPKE TNVKPRQSYI NQPPSVSQEM  240
IDEAAITAAC KVVEAENKIN VAKAAVEELE KTTKLADETE LMLELSWRGC GLGLSLWGLY  300
RRAQQCVYIH PLVMAGMASE GTQYDPRQFD TKMNAILGEE GQETFYTTYD EVCDSFDTME  360
LRSDLLRGIY AYGFEKPSAI QQRGIIPFCK GLDVIQQAQS GTGKTATFCS GVLQQLDYTL  420
LQCQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILQ SGVHVVVGTP  480
GRVFDMLRRQ SLRADAIKMF VLDEADEMLS RGFKDQIYDI FQLLPSKVQV GVFSATMPPE  540
ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVDKEEWK LETLCDLYET LAITQSQIQF  600
LELVASEEMF RSKSCREEIT GRRSSITNKY HCLTSNGEAA PSPTNQLPPV MMRSYSASTY  660
SPYKNPTTVR DRDSPNSKSK RRTSKAKKGY KGLCEAEIQR KKRVAGYNVY GVEGKVKGSM  720
KKSFKWFKET CSNAVYGLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2zu6_A1e-1183475987259Eukaryotic initiation factor 4A-I
2zu6_C1e-1183475987259Eukaryotic initiation factor 4A-I
2zu6_D1e-1183475987259Eukaryotic initiation factor 4A-I
2zu6_F1e-1183475987259Eukaryotic initiation factor 4A-I
3eiq_A1e-11833859824285Eukaryotic initiation factor 4A-I
3eiq_D1e-11833859824285Eukaryotic initiation factor 4A-I
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.147480.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00069970001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078JKV60.0A0A078JKV6_BRANA; BnaA07g38930D protein
STRINGBra016037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.17e-85MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]