PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00070150001

Common Name

GSBRNA2T00070150001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CAMTA

Protein Properties

Length: 1035aa MW: 115306 Da PI: 5.3218

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00070150001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.2	1.5e-53	33	148	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 ++e ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+h+e+ GSBRNA2T00070150001 33 YHEaQTRWLKPPEVHFILQNHERYQLAHTPPQNPPSGSLYLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYVHGEH 122 56779*********************************************************************************** PP CG-1 91 nptfqrrcywlLeeelekivlvhyle 116 +ptfqrr+yw+L+ e+++ivlvhy++ GSBRNA2T00070150001 123 DPTFQRRIYWMLDPEYDHIVLVHYRD 148 **********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.578	29	155	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.0E-76	32	150	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.7E-47	35	148	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.5E-8	478	566	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.29E-16	479	562	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.7E-8	479	562	IPR002909	IPT domain
CDD	cd00102	4.62E-6	479	564	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.5E-16	659	758	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.069	666	758	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.8E-16	667	761	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.02E-13	671	758	No hit	No description
Pfam	PF12796	9.8E-8	682	759	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.9E-4	699	728	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.06	699	731	IPR002110	Ankyrin repeat
SMART	SM00015	14	812	834	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.61E-6	814	920	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.638	814	841	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.97	868	890	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	869	898	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.008	871	889	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.3E-4	891	913	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.267	892	916	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.7E-5	894	913	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence Send to blast
MSSTTILDIC SVSTGQVSYL IIMQSEYEIS NLYHEAQTRW LKPPEVHFIL QNHERYQLAH 60 TPPQNPPSGS LYLFNRRVLK FFRKDGHQWR RKKDGRAIAE AHERLKVGNV EALSCYYVHG 120 EHDPTFQRRI YWMLDPEYDH IVLVHYRDIS DGKEGRQTSG TVLQFSQNAS TLFSSPSSIG 180 TQNGSYNHYI GDSTDLLQQH SSTSPEVNSE VVFNSNGVET PQGSGSSYEF ENRQAIKRLE 240 EQLSLGDDIV STVDPLYAQN ESLDSLQFLA QPGTVYQRPE NNKLERCYGG YVGAQYNVDP 300 LYSQNESLDS LLSLDSAEDI NHLAQPATGH QRPENNRLER SYGGYIGADY HPNNLTLVKN 360 DSGGNGGSGD QESESWKDVL EACEASVAIN SEGSTPSSVK GLLPGMQEDS NWSYSNQADQ 420 GTLLLPQELG SFEHPACYPE LGAPENNAEY SRIMDDEGII RMPLQQEMRP TISHKQEFTI 480 QDVSPQWGYA NETTKVIIIG SFLCDPSEST WSCMFGSVEV PFEIIKEGVI RCEAPPCGPG 540 KVNLCITSRD GLSCSQIKEF VYRDKPDTSC STCSRDELFL LVRFVQTLLS DKKSNIEPGI 600 DKLKKIKADD DEEEWSHIID TILDDTATPS STVDWLLQKL LKDKLDAWLS SRSQDEDQTS 660 CSLSKQEQGI IHMVAGLGFE WALHPLLGLG VSVDFRDSNG WSALHWAARY GREKMVAALI 720 ASGASAGAVT DPNAQDPAGK TAASIAASNG HKGLAGYLSE VALTNHLSSL TLEETEHSLG 780 SAQMQAEMIV NSISGRSPPG NDDPHSRAAL RNVAQAAARI QAAFRAHSFR KRQEREAAMA 840 ACYQEYGIYA DIEGIAAMSK LAFGNVKNYN SAALSIQKKY RGYKGRKEFL AKRQKVVKIQ 900 AYVRGYQVRK HYKVICWAVG ILDKVVLRWR RKGVGLKGFR QDVESREESE DEDILKVFRK 960 EKVDGAVNEA FSRVLSMTNS PDARQQYQRV LKRYCQTKAE LGKTETLGTD GGDEDDDVLL 1020 DIADMRYENL RTLP*

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence Send to blast

MSSTTILDIC SVSTGQVSYL IIMQSEYEIS NLYHEAQTRW LKPPEVHFIL QNHERYQLAH  60
TPPQNPPSGS LYLFNRRVLK FFRKDGHQWR RKKDGRAIAE AHERLKVGNV EALSCYYVHG  120
EHDPTFQRRI YWMLDPEYDH IVLVHYRDIS DGKEGRQTSG TVLQFSQNAS TLFSSPSSIG  180
TQNGSYNHYI GDSTDLLQQH SSTSPEVNSE VVFNSNGVET PQGSGSSYEF ENRQAIKRLE  240
EQLSLGDDIV STVDPLYAQN ESLDSLQFLA QPGTVYQRPE NNKLERCYGG YVGAQYNVDP  300
LYSQNESLDS LLSLDSAEDI NHLAQPATGH QRPENNRLER SYGGYIGADY HPNNLTLVKN  360
DSGGNGGSGD QESESWKDVL EACEASVAIN SEGSTPSSVK GLLPGMQEDS NWSYSNQADQ  420
GTLLLPQELG SFEHPACYPE LGAPENNAEY SRIMDDEGII RMPLQQEMRP TISHKQEFTI  480
QDVSPQWGYA NETTKVIIIG SFLCDPSEST WSCMFGSVEV PFEIIKEGVI RCEAPPCGPG  540
KVNLCITSRD GLSCSQIKEF VYRDKPDTSC STCSRDELFL LVRFVQTLLS DKKSNIEPGI  600
DKLKKIKADD DEEEWSHIID TILDDTATPS STVDWLLQKL LKDKLDAWLS SRSQDEDQTS  660
CSLSKQEQGI IHMVAGLGFE WALHPLLGLG VSVDFRDSNG WSALHWAARY GREKMVAALI  720
ASGASAGAVT DPNAQDPAGK TAASIAASNG HKGLAGYLSE VALTNHLSSL TLEETEHSLG  780
SAQMQAEMIV NSISGRSPPG NDDPHSRAAL RNVAQAAARI QAAFRAHSFR KRQEREAAMA  840
ACYQEYGIYA DIEGIAAMSK LAFGNVKNYN SAALSIQKKY RGYKGRKEFL AKRQKVVKIQ  900
AYVRGYQVRK HYKVICWAVG ILDKVVLRWR RKGVGLKGFR QDVESREESE DEDILKVFRK  960
EKVDGAVNEA FSRVLSMTNS PDARQQYQRV LKRYCQTKAE LGKTETLGTD GGDEDDDVLL  1020
DIADMRYENL RTLP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00070150001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189200	0.0	AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620826.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like
Refseq	XP_013671039.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A078FI61	0.0	A0A078FI61_BRANA; BnaA02g13050D protein
STRING	Bo2g055720.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]