PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070220001
Common NameGSBRNA2T00070220001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37764.3 Da    PI: 10.4747
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind37.67.5e-1260162192
            GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaav............aerd........maflqrdkala 68 
                          md+dg  +rn+gyy+++ +++  lg+ql+ si +r++k+    +n +++++++ +             +rd        m++    ++l+
  GSBRNA2T00070220001  60 MDEDGLSNRNWGYYDQS-QFRPSLGFQLIPSIVDRNEKQflFPQNPNFITTNNGYcgggssssnvmsFPRDytasdapfMSY----SWLN 144
                          9**************99.*********************9945555557777777566666555555444466666566666....8888 PP

            GAGA_bind  69 ernkalverdnkllalllvensla 92 
                          +      +rd+k++++l+++ s  
  GSBRNA2T00070220001 145 Q------HRDSKFFNNLPNNPSNH 162
                          8......9********99776543 PP
2GAGA_bind2662e-81184337139301
            GAGA_bind 139 eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
                           +++e+ +++++  + + ++pk+kk++k k+        +  +++++++   +ksi++v+ngv++D++ lPvPvCsCtG ++qCY+WG+G
  GSBRNA2T00070220001 184 GEVDESLKRRQCGGG-QRADPKAKKERKLKD--------NIVPRMQRERSPLRKSIEMVINGVTIDIGCLPVPVCSCTGLSQQCYRWGCG 264
                          445555666666643.345677777777766........3344445567789************************************** PP

            GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          GWqSaCCtt++S+yPLP++tk+rgaRiagrKmSqgafkk+LekL+a+G+d+s p+DLk+hWAkHGtnkfvtir
  GSBRNA2T00070220001 265 GWQSACCTTNVSMYPLPMNTKKRGARIAGRKMSQGAFKKVLEKLSADGFDFSSPIDLKSHWAKHGTNKFVTIR 337
                          ************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.5E-13360337IPR010409GAGA-binding transcriptional activator
PfamPF062173.0E-660182IPR010409GAGA-binding transcriptional activator
PfamPF062176.8E-76188337IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MITRLISKTK TISDSIGPWK LPLSSFLPSP TVPSLLSLSL SKGKKKSKRS ISPSSKFLIM  60
DEDGLSNRNW GYYDQSQFRP SLGFQLIPSI VDRNEKQFLF PQNPNFITTN NGYCGGGSSS  120
SNVMSFPRDY TASDAPFMSY SWLNQHRDSK FFNNLPNNPS NHHTLLDPRA QPMQLLQFPK  180
PEAGEVDESL KRRQCGGGQR ADPKAKKERK LKDNIVPRMQ RERSPLRKSI EMVINGVTID  240
IGCLPVPVCS CTGLSQQCYR WGCGGWQSAC CTTNVSMYPL PMNTKKRGAR IAGRKMSQGA  300
FKKVLEKLSA DGFDFSSPID LKSHWAKHGT NKFVTIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.132100.0microspore
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the gynobasal portion of the ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070220001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715996.10.0protein BASIC PENTACYSTEINE3-like
SwissprotQ9C9X61e-142BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBLA0A078FIC20.0A0A078FIC2_BRANA; BnaA02g13600D protein
STRINGBra033959.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153471518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.11e-139basic pentacysteine 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]