PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070282001
Common NameGSBRNA2T00070282001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 476aa    MW: 52719.4 Da    PI: 5.7509
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070282001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35271172101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d++++e++sws+n+nsf+v+++ ef+  +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k
  GSBRNA2T00070282001  27 FLVKTYEMVDDSSTDEIVSWSSNNNSFIVWNHAEFSCVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQK 107
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  GSBRNA2T00070282001 108 HLLKNIHRRK 117
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-3723116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-6023116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNGALGNSSA SVTGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE  60
FSCVLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH  120
SHSQPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFEQ HKSTAKHNLD EMAEHVEDME  180
KRQEKLMSFL ETAMRNPTFI KNFGRKVEDL DVSAYNKKRR LPQGEQSKPP SEDSHLDNSS  240
GSSRPESGNI FHQNFSNKLR LELSPAVSDM NMVSHSIQSS NEGGASPKGI LSGSDPNTIQ  300
TRREGLPFAP EALELADTGS CPGILLLNDK TIPEPLQQMI TSSEETDGSF SCHLNLTLAS  360
APLPDKTASQ IAKTTHKSQE IGRVTELNFN SIETSASEKN RGQQEVAAGG KLTNAAPPAR  420
VNDVFWEQFL TERPGSSDNE EASSTYRENP CEEQEEKRNG HVISRCTKNI EQLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231811617129Heat shock factor protein 1
5d5v_B3e-231811617129Heat shock factor protein 1
5d5v_D3e-231811617129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.56480.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070282001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686304.10.0heat stress transcription factor A-5
RefseqXP_013686305.10.0heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A078FKN00.0A0A078FKN0_BRANA; BnaC04g29180D protein
STRINGBo4g128450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]