PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070348001
Common NameGSBRNA2T00070348001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 161aa    MW: 17757.8 Da    PI: 6.9499
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070348001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.4e-071450339
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                         i     + +tf+kR  g+  K + L+ L++a++av+ 
  GSBRNA2T00070348001 14 ITKRESAATTFTKRSFGLHSKVSQLCLLTGAQIAVLA 50
                         66667789***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.218449IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-4467IPR002100Transcription factor, MADS-box
CDDcd002668.62E-16583No hitNo description
SuperFamilySSF554552.22E-11577IPR002100Transcription factor, MADS-box
PfamPF003191.4E-81354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVKGTKRKAT MEKITKRESA ATTFTKRSFG LHSKVSQLCL LTGAQIAVLA TPPSANSNVS  60
FFSFGHSSVD SIVNAFLTGE RPAVREEIDD HEEDLGICLA RKELGLPQWL EDDSLLKSKN  120
PQELRRGRAS SEETEEEERR DNAENRTHGA TNPSSPVRFQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070348001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013689865.11e-85agamous-like MADS-box protein AGL97
TrEMBLA0A078FIG81e-114A0A078FIG8_BRANA; BnaC04g28840D protein
STRINGBo4g127100.14e-80(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.18e-49M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]