PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070403001
Common NameGSBRNA2T00070403001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 328aa    MW: 37683.3 Da    PI: 9.1982
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070403001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-1823110198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv      ++s++lv+p  f+ ++ ++k+ +k ++l de gr W+v+     k g +v+++GW++F++++ L+ gDf++F+++g+s+f
  GSBRNA2T00070403001  23 FFKVY--LPEFSSHQLVIPQAFI-NI-LDKPLPKRVVLVDEIGRLWDVET----KTGVVVFRQGWEKFANEHSLEFGDFLLFRYNGESRF 104
                          77877..78999***********.44.567899*****************....7778***************************99999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v++f 
  GSBRNA2T00070403001 105 --DVTIFA 110
                          ..888876 PP
2B342.31.4e-13218310898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld..gr.sefelv 93 
                            v+++++l +p +f++++g++ ee++++ l de+g++W +k+  +k++++y+++ + W  F+++++L+    ++F+++  ++ ++ + +
  GSBRNA2T00070403001 218 IAVGSLRLLEIPTTFLKANGIELEEGQDIELCDENGKKWPLKI--EKHGRGYIFSyDSWLCFCESHNLRNPNKCLFEFIvsSNgTCSQIL 305
                          56889999***********98889999****************..******888779********************6533556777778 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v++fr
  GSBRNA2T00070403001 306 VRIFR 310
                          88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2220114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.7921112IPR003340B3 DNA binding domain
SMARTSM010195.7E-1723112IPR003340B3 DNA binding domain
CDDcd100173.04E-1823109No hitNo description
PfamPF023622.5E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-15207310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15207310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.364211312IPR003340B3 DNA binding domain
SMARTSM010194.2E-11214312IPR003340B3 DNA binding domain
PfamPF023625.0E-11218311IPR003340B3 DNA binding domain
CDDcd100173.26E-11220310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVETSEKTSS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKRVVLVDEI  60
GRLWDVETKT GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR  120
FRVSVEKEPV IVKPVGISIK PEPWEDCGKR VMQNRKRVLV REEASVLGDI EPGHRRNTRK  180
KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRNIAV GSLRLLEIPT TFLKANGIEL  240
EEGQDIELCD ENGKKWPLKI EKHGRGYIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT  300
CSQILVRIFR GTLLTTAAKS GYHVLSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070403001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561510.10.0putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-125Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A078FKU10.0A0A078FKU1_BRANA; BnaC07g16400D protein
TrEMBLA0A0D3D8A50.0A0A0D3D8A5_BRAOL; Uncharacterized protein
STRINGBo7g064220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-127B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]