PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070412001
Common NameGSBRNA2T00070412001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 230aa    MW: 26572.8 Da    PI: 5.0017
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070412001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.46.6e-24152201352
               RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          k++s e+++ yF++pi++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+
  GSBRNA2T00070412001 152 KSLSREEIKPYFYMPITKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 201
                          789********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.142136221IPR003035RWP-RK domain
PfamPF020423.7E-20154201IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTDHKQLQNW SQFDDYEFIQ EENLFSLFDH SLSFDYNSSI NNPLSDIQTQ TWFSVQDIIN  60
VDPLSTRFSA GDHTFMASDD LEAISTFSQA DVFSGSWNEI TGNFNNHFEP IRDEISSIGI  120
PNMEMILHES NNTMKEITCY KRRERTDGVL VKSLSREEIK PYFYMPITKA AKELNVGLTL  180
LKKKSRELGI SRWPHRKLMS IQGIITNLLD HLGKTEDERI RTCMSRSET*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070412001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594762.11e-163PREDICTED: protein RKD3-like
RefseqXP_013689678.11e-163protein RKD3-like
SwissprotQ9FGD11e-67RKD3_ARATH; Protein RKD3
TrEMBLA0A078FEJ31e-170A0A078FEJ3_BRANA; BnaC07g16380D protein
STRINGBo7g064180.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.15e-70RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]