PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070528001
Common NameGSBRNA2T00070528001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 259aa    MW: 28793.1 Da    PI: 5.0403
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070528001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.2e-132663137
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT.-EEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCd.aevav 37
                         k+ie+k  r+vtf+kRr+g++ KA+EL+ L   +++a+
  GSBRNA2T00070528001 26 KFIEDKAVRSVTFCKRREGLFSKASELCLLSPtTQIAI 63
                         79****************************85145555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.4231855IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-111879IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-82040IPR002100Transcription factor, MADS-box
CDDcd002661.79E-212095No hitNo description
SuperFamilySSF554554.19E-1420106IPR002100Transcription factor, MADS-box
PfamPF003192.8E-112764IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-84055IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNVHTNDACF LTIIIMGGEK RKIDIKFIED KAVRSVTFCK RREGLFSKAS ELCLLSPTTQ  60
IAILATPLST NSHAGFYSFG HSSVDHVVSS LLHDQSPGDP TNQVENRRLG FWWEDQALER  120
LESVDELRDA TDAVTRMLNN VRLRLDAVKG NQRGGALVIH QEDARAPKIR NTNKEKTNQI  180
TNSESANSGL VIHQDEVPQL CNTNTNYKNE ETTTQVANSE GASGSGSSVE KNDDVLHIDD  240
LDIDDFFIDF KLDPLFKF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00208DAPTransfer from AT1G60920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070528001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509836.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6338e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078FIR60.0A0A078FIR6_BRANA; BnaA09g14020D protein
STRINGBra027116.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.11e-69AGAMOUS-like 55
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]