PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070546001
Common NameGSBRNA2T00070546001, LOC106376715
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 322aa    MW: 36021.3 Da    PI: 8.7368
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070546001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.5e-53161421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  GSBRNA2T00070546001  16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDK 104
                          79****************************.89***************988899************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ ++++vg+kk Lvfy g+ pkg ktdW+mheyrl
  GSBRNA2T00070546001 105 PIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
                          ************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-649178IPR003441NAC domain
PROSITE profilePS5100560.64716177IPR003441NAC domain
PfamPF023651.3E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MENMGDSTIG PGHPHLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE IDLYKFDPWE  60
LPSKASFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL  120
VFYGGKPPKG IKTDWIMHEY RLTDGNLNTA AKPPDSTTSR KNSLRLDDWV LCRIYKKNSS  180
QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNNNNNN EEHFFDGMAV SSDKRSLCGQ  240
YRIGHEASGS SSFGSFLSSK RFHHTSDLNN DNYNVSFVSM LSEIPQSSGF HGNGVIDTTS  300
TLADHGVLRQ AFQLPNMNWH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-741618017168NO APICAL MERISTEM PROTEIN
1ut4_B4e-741618017168NO APICAL MERISTEM PROTEIN
1ut7_A4e-741618017168NO APICAL MERISTEM PROTEIN
1ut7_B4e-741618017168NO APICAL MERISTEM PROTEIN
3swm_A4e-741618020171NAC domain-containing protein 19
3swm_B4e-741618020171NAC domain-containing protein 19
3swm_C4e-741618020171NAC domain-containing protein 19
3swm_D4e-741618020171NAC domain-containing protein 19
3swp_A4e-741618020171NAC domain-containing protein 19
3swp_B4e-741618020171NAC domain-containing protein 19
3swp_C4e-741618020171NAC domain-containing protein 19
3swp_D4e-741618020171NAC domain-containing protein 19
4dul_A4e-741618017168NAC domain-containing protein 19
4dul_B4e-741618017168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.7730.0bud| flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070546001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747590.0KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672290.10.0NAC transcription factor 25
SwissprotQ8GY420.0NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A078FI470.0A0A078FI47_BRANA; BnaA09g13880D protein
STRINGBo01282s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.10.0NAC domain containing protein 25
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]