PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070582001
Common NameGSBRNA2T00070582001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 194aa    MW: 22208.5 Da    PI: 10.0102
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070582001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57384.71.2e-261721997
               DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                         +idfk++tgksp+dd++  y+++kksisf+vsk+q+++Kir+L+kK+ +k+k        sf+k+hdqk++ l++ iWg
  GSBRNA2T00070582001  1 MIDFKNDTGKSPYDDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRLCQYIWG 72
                         9***********************************************99876.......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-19172IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MIDFKNDTGK SPYDDTNVYY DYIKKSISFE VSKNQFMDKI RSLRKKYIGK EKPSFTKPHD  60
QKSYRLCQYI WGPDGMGLES AVKSNGASKK SQKKTKKLDS VKQELSFGAS PNGKTHDWFE  120
NSFLVKGIAG FGVDEHYVKQ RWSLVPVETK KKVEEKLKLL QAKEIEFVLQ KTEVLHEVTT  180
MIAEASKNKP LDI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.119611e-121flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070582001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716592.11e-117probable transcription factor At1g61730
SwissprotQ9SYA94e-83STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A078FI801e-139A0A078FI80_BRANA; BnaA09g13630D protein
STRINGBra027078.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.19e-67DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]