PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070834001
Common NameGSBRNA2T00070834001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 494aa    MW: 54359.8 Da    PI: 5.695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070834001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.42e-951284922374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +e L++++++v+s++l+ a+ +L+rl+++ +sp+g+p+ R+a+yf+eAL + l++     ++  + + ts+++ +e++ a k fs +sPi
  GSBRNA2T00070834001 128 IEDLIRVVDCVDSDELQHAHVILSRLNQRlRSPAGRPLLRAAFYFKEALGSLLSG-----SNRNQNRLTSWTEIVERIRAIKEFSGISPI 212
                          689*************************99*************************.....7788899999999***************** PP

                 GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          + fsh+taNqaIl++++++     Hi+Df+i+ G+Q+++L++++a++++ +   lR+T+v+++e  s+ e++ ++e+L +fA+ l+++f+
  GSBRNA2T00070834001 213 PLFSHFTANQAILDSLHQSssPFAHIVDFEIGFGGQYASLMREIADKSSATGgFLRVTAVVPEE--SAVETRLVKENLVQFAADLKIRFQ 300
                          ******************966678***********************966655*********66..99********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                          +++++++++e+l+++++r+ +gE ++V ++  ++r l       + ++++++ ++++sP+vvv+v++e      +++sF ++f++ +e+y
  GSBRNA2T00070834001 301 IDFVLMRTFEMLSFKAIRFVEGERTVVLISPVIFRRL-------NGISSFVNDLRRVSPNVVVFVDSEgwNGIsGAGSFQREFVSGFEFY 383
                          ************************************9.......33557*******************642235889************* PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          +++++sl+a +p+ +  ++ +E ++l+++i  +v ++  + + +    ++Wre++ +aG++ vpls+++  qa++l++k +++g++v ++
  GSBRNA2T00070834001 384 TMVLESLDAAAPSGDLVKKIIEGFVLRPKIAAAVEAAAVN-KRQGGGEMTWREAFCAAGMRMVPLSQFVDFQAECLVEKAQVRGFHVAKR 472
                          ************************************9999.55556689***************************************** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g+lvl+W++rpLv++SaWr
  GSBRNA2T00070834001 473 QGELVLCWHGRPLVATSAWR 492
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.019101472IPR005202Transcription factor GRAS
PfamPF035146.8E-93128492IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MRVPASSNSN SGGKNLVVYD EPTSVLGLRR SPTPTTVEEK PLVSAASGGD NQFPSDDHAM  60
RSMDWDSIMR ELELDDDSTP NLKPNFPPPA HFAVVDPPLP VFPDQLNPAE YGYDSNSNNG  120
GGGGFDIIED LIRVVDCVDS DELQHAHVIL SRLNQRLRSP AGRPLLRAAF YFKEALGSLL  180
SGSNRNQNRL TSWTEIVERI RAIKEFSGIS PIPLFSHFTA NQAILDSLHQ SSSPFAHIVD  240
FEIGFGGQYA SLMREIADKS SATGGFLRVT AVVPEESAVE TRLVKENLVQ FAADLKIRFQ  300
IDFVLMRTFE MLSFKAIRFV EGERTVVLIS PVIFRRLNGI SSFVNDLRRV SPNVVVFVDS  360
EGWNGISGAG SFQREFVSGF EFYTMVLESL DAAAPSGDLV KKIIEGFVLR PKIAAAVEAA  420
AVNKRQGGGE MTWREAFCAA GMRMVPLSQF VDFQAECLVE KAQVRGFHVA KRQGELVLCW  480
HGRPLVATSA WRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2213349125378Protein SCARECROW
5b3h_A3e-2213349124377Protein SCARECROW
5b3h_D3e-2213349124377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.246490.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070834001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593826.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A078FJA70.0A0A078FJA7_BRANA; BnaC07g03310D protein
TrEMBLA0A0D3D2Z50.0A0A0D3D2Z5_BRAOL; Uncharacterized protein
STRINGBo7g009980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]