PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00070860001
Common NameGSBRNA2T00070860001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 307aa    MW: 35230.5 Da    PI: 5.9091
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00070860001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.4e-34141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d++ +++isws++++sf+v+ + ef+k++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ 
  GSBRNA2T00070860001  14 FLTKTYEMVDDSSSDSIISWSDHNKSFIVKSPAEFSKDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFVRGQP 94 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                           l+++i+r+k 
  GSBRNA2T00070860001  95 YLMKNIHRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDENNGVSTS LPPFLTKTYE MVDDSSSDSI ISWSDHNKSF IVKSPAEFSK DLLPRFFKHK  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFV RGQPYLMKNI HRRKPVHSHS LQNLQAQSPL  120
SESERQSMKD QIERLKREKE VLLADLQNQE LERKGFELQV TALKDRLQHM EQRQRSIVTF  180
VSQVLEKPGL SLNLETHERR KRKLQETETS LPPSRSHAAQ VEKLESSLTF LENLVTESCD  240
KGMDIDVNES TSCAESLSNG DNRAKSTKID MNAEPVTIAV AAPKTGVNDV FWEQCLTENP  300
GSIEQQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22910324129Heat shock factor protein 1
5d5v_B2e-22910324129Heat shock factor protein 1
5d5v_D2e-22910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203ERRKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.222870.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings and at lower levels in leaves. {ECO:0000269|PubMed:18381353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00070860001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114395.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_009114396.10.0PREDICTED: heat stress transcription factor A-4c
RefseqXP_013661865.10.0heat stress transcription factor A-4c-like
SwissprotQ9FK721e-167HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A078FIR10.0A0A078FIR1_BRANA; BnaA09g17760D protein (Fragment)
STRINGBra017595.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-167HSF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]