PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00071095001

Common Name

GSBRNA2T00071095001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 219aa MW: 24686.1 Da PI: 10.1377

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00071095001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	153.9	1.1e-47	35	174	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstW+p+++ r+ + +s++++++k+ + ++s+k s l +++s GSBRNA2T00071095001 35 EEKVCRDCGNRAKKECLFERCRTCCKSRGYKCATHVKSTWIPSHHHRSP-----S------SSSDRNRNKKLKIDSSDKPSVLIVPTTTS 113 6789*************************************998873.....1......22233444555555556666666666666 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ lP +++++avf+++rv+++++ ++ e++Yq++v+i Ghvf+G+L+++G+++ GSBRNA2T00071095001 114 RRQERSFKEG-LPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIHGHVFRGFLHYHGVDH 174 6666555544.***************9857789*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-44	37	173	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-25	38	78	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.8E-26	124	172	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLGLRNIILL PPPSQITHPS VEDNNNNKAR NSNVEEKVCR DCGNRAKKEC LFERCRTCCK 60 SRGYKCATHV KSTWIPSHHH RSPSSSSDRN RNKKLKIDSS DKPSVLIVPT TTSRRQERSF 120 KEGLPGKIEA PAVFKRTRVT AISNEEQSEI GYQATVTIHG HVFRGFLHYH GVDHNKAFPC 180 LSKKLCDGGA NRATVEARVR YYTDYCRQLV QQGVSMSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15897	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00071095001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636013.1	1e-134	PREDICTED: protein SHI RELATED SEQUENCE 6-like
Swissprot	Q9M2U4	2e-91	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A078FLR0	1e-162	A0A078FLR0_BRANA; BnaC04g26320D protein
TrEMBL	A0A3P6CJ23	1e-149	A0A3P6CJ23_BRAOL; Uncharacterized protein
STRING	Bo4g119970.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	7e-92	SHI-related sequence 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]