PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071475001
Common NameGSBRNA2T00071475001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 264aa    MW: 29170.3 Da    PI: 5.1747
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071475001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1992152257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t+t+ ql++Le+ F +   +ps++++++++++l     + e++V++WFqNrRa+ k+
  GSBRNA2T00071475001  92 RQRWTPTPVQLQILERIFDQgIGTPSKQKIKDITEELsqhgPIAEQNVYNWFQNRRARSKR 152
                          89*****************99*****************9999*****************97 PP
2Wus_type_Homeobox101.18.1e-3392154365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G i ++NV++WFQNr+aR+++kq
  GSBRNA2T00071475001  92 RQRWTPTPVQLQILERIFDQGIGTPSKQKIKDITEELSQHGPIAEQNVYNWFQNRRARSKRKQ 154
                          79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1786154IPR009057Homeodomain-like
PROSITE profilePS5007113.86488153IPR001356Homeobox domain
SMARTSM003892.4E-1390157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-1590155IPR009057Homeodomain-like
CDDcd000864.32E-1292154No hitNo description
PfamPF000466.3E-1792152IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEWDNQQQPS NNPSSNLQGI DVNGGSGSGG MYVKVMTDEQ LETLRKQIAI YATICERLVE  60
MHKTFTSQQD LAGRVGGLYA DPTFGHKMTG GRQRWTPTPV QLQILERIFD QGIGTPSKQK  120
IKDITEELSQ HGPIAEQNVY NWFQNRRARS KRKQHGGGGG VGSSNNNNGE TEVETDQAET  180
VNEKRKMPES LLVLPDGNNN NGIGTTSATS PRSEEDLCFH CPEMSSDLHL LGVLSNPRDE  240
HLVGKMGMSE SYNLYDHVED YGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.226020.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071475001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643268.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-131WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A078HV110.0A0A078HV11_BRANA; BnaA03g53400D protein
STRINGBra017720.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-123WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]